Publications

$\text{Prediction of multi-relational drug-gene interaction via Dynamic hyperGraph Contrastive Learning}$
Wen Tao, Yuansheng Liu, Xuan Lin, Bosheng Song, Xiangxiang Zeng
Briefings in Bioinformatics, 2023, JCR: Q1, IF: 9.5, The paper was covered by the following media outlet: AI in Graph, PHAIMUS
[Code] [URL]

$\text{Bridging chemical structure and conceptual knowledge enables accurate prediction of compound-protein interaction}$
Wen Tao, Xuan Lin, Yuansheng Liu, Li Zeng, Tengfei Ma, Ning Cheng, Jing Jiang, Xiangxiang Zeng, Sisi Yuan
BMC Biology, 2024, JCR: Q1, IF: 4.4
[Code] [URL]

$\text{Learning to Denoise Biomedical Knowledge Graph for Robust Molecular Interaction Prediction}$
Tengfei Ma, Yujie Chen, Wen Tao, Dashun Zheng, Xuan Lin, Patrick Cheong-Iao Pang, Yiping Liu, Yijun Wang, Longyue Wang, Bosheng Song, Xiangxiang Zeng, Philip S. Yu
IEEE Transactions on Knowledge and Data Engineering, 2024, JCR: Q1, IF: 8.9, The paper was covered by the following media outlet: AI in Graph
[Code] [URL]

$\text{Towards Synergistic Path-based Explanations for Knowledge Graph Completion: Exploration and Evaluation}$
Tengfei Ma, Xiang Song, Wen Tao, Mufei Li, Jiani Zhang, Xiaoqin Pan, Yijun Wang, Bosheng Song, Xiangxiang Zeng
ICLR 2025, 2025
[OpenReview] [Preprint]